Package: SpectraToQueries 0.0.0.9002
Adriano Rutz
SpectraToQueries: Spectra to queries
SpectraToQueries provides the infrastructure to translate spectra to queries.
Authors:
SpectraToQueries_0.0.0.9002.tar.gz
SpectraToQueries_0.0.0.9002.zip(r-4.7)SpectraToQueries_0.0.0.9002.zip(r-4.6)SpectraToQueries_0.0.0.9002.zip(r-4.5)
SpectraToQueries_0.0.0.9002.tgz(r-4.6-any)SpectraToQueries_0.0.0.9002.tgz(r-4.5-any)
SpectraToQueries_0.0.0.9002.tar.gz(r-4.7-any)SpectraToQueries_0.0.0.9002.tar.gz(r-4.6-any)
SpectraToQueries_0.0.0.9002.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
SpectraToQueries/json (API)
NEWS
| # Install 'SpectraToQueries' in R: |
| install.packages('SpectraToQueries', repos = c('https://spectra-to-knowledge.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/spectra-to-knowledge/spectra-to-queries/issues
Pkgdown/docs site:https://spectra-to-knowledge.github.io
knowledgeextractionspectralinformationqueryingsystemknowledge-extractionmonoterpene-indole-alkaloidsquerying-systemspectral-informationspectral-librarytandem-ms
Last updated from:fe032dc4ff (on main). Checks:7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | NOTE | 150 | ||
| source / vignettes | OK | 204 | ||
| linux-release-x86_64 | NOTE | 192 | ||
| macos-release-arm64 | NOTE | 126 | ||
| macos-oldrel-arm64 | NOTE | 123 | ||
| windows-devel | NOTE | 113 | ||
| windows-release | NOTE | 110 | ||
| windows-oldrel | NOTE | 100 | ||
| wasm-release | OK | 161 |
Exports:spectra_to_queries
Dependencies:BHBiocGenericsBiocParallelcliclueclustercodetoolscpp11crayondata.tableformatRfsfutile.loggerfutile.optionsgenericsgluehmsIRangeslambda.rlifecyclemagrittrMASSMetaboCoreUtilsMsBackendMgfMsCoreUtilspillarpkgconfigprettyunitsprogressProtGenericspurrrR6RcpprlangS4VectorssnowSpectratibbletidyselecttidytableutf8vctrswithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Combine ions into minimal AND/OR expression with sorting | combine_ions_minimal |
| Check if spectrum contains all target m/z values | contains_all_mz |
| Create directory | create_dir |
| Create matrix | create_matrix |
| Filter matrix | filter_matrix |
| Fix binned mzs | fix_binned_mzs |
| Generate combinations | generate_combinations |
| Generate combinations with progress | generate_combinations_progress |
| Harmonize mzs | harmonize_mzs |
| Normalize peaks | normalize_peaks |
| Perform list of queries | perform_list_of_queries |
| Perform list of queries (progress) | perform_list_of_queries_progress |
| Perform query | perform_query |
| Spectra to queries | spectra_to_queries |
