Package: SpectraToQueries 0.0.0.9002

Adriano Rutz

SpectraToQueries: Spectra to queries

SpectraToQueries provides the infrastructure to translate spectra to queries.

Authors:Adriano Rutz [aut, cre], Sarah Szwarc [ctb]

SpectraToQueries_0.0.0.9002.tar.gz
SpectraToQueries_0.0.0.9002.zip(r-4.7)SpectraToQueries_0.0.0.9002.zip(r-4.6)SpectraToQueries_0.0.0.9002.zip(r-4.5)
SpectraToQueries_0.0.0.9002.tgz(r-4.6-any)SpectraToQueries_0.0.0.9002.tgz(r-4.5-any)
SpectraToQueries_0.0.0.9002.tar.gz(r-4.7-any)SpectraToQueries_0.0.0.9002.tar.gz(r-4.6-any)
SpectraToQueries_0.0.0.9002.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
SpectraToQueries/json (API)

# Install 'SpectraToQueries' in R:
install.packages('SpectraToQueries', repos = c('https://spectra-to-knowledge.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/spectra-to-knowledge/spectra-to-queries/issues

Pkgdown/docs site:https://spectra-to-knowledge.github.io

On CRAN:

Conda:

knowledgeextractionspectralinformationqueryingsystemknowledge-extractionmonoterpene-indole-alkaloidsquerying-systemspectral-informationspectral-librarytandem-ms

3.43 score 2 stars 1 exports 43 dependencies

Last updated from:f420411543 (on main). Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK154
source / vignettesOK205
linux-release-x86_64OK184
macos-release-arm64OK116
macos-oldrel-arm64OK109
windows-develOK82
windows-releaseOK85
windows-oldrelOK143
wasm-releaseOK169

Exports:spectra_to_queries

Dependencies:BHBiocGenericsBiocParallelcliclueclustercodetoolscpp11crayondata.tableformatRfsfutile.loggerfutile.optionsgenericsgluehmsIRangeslambda.rlifecyclemagrittrMASSMetaboCoreUtilsMsBackendMgfMsCoreUtilspillarpkgconfigprettyunitsprogressProtGenericspurrrR6RcpprlangS4VectorssnowSpectratibbletidyselecttidytableutf8vctrswithr

Readme and manuals

Help Manual

Help pageTopics
Combine ions into minimal AND/OR expression with sortingcombine_ions_minimal
Check if spectrum contains all target m/z valuescontains_all_mz
Create directorycreate_dir
Create matrixcreate_matrix
Filter matrixfilter_matrix
Fix binned mzsfix_binned_mzs
Generate combinationsgenerate_combinations
Generate combinations with progressgenerate_combinations_progress
Harmonize mzsharmonize_mzs
Normalize peaksnormalize_peaks
Perform list of queriesperform_list_of_queries
Perform list of queries (progress)perform_list_of_queries_progress
Perform queryperform_query
Spectra to queriesspectra_to_queries