Package: SpectraToQueries 0.0.0.9002
SpectraToQueries: Spectra to queries
SpectraToQueries provides the infrastructure to translate spectra to queries.
Authors:
SpectraToQueries_0.0.0.9002.tar.gz
SpectraToQueries_0.0.0.9002.zip(r-4.7-any)SpectraToQueries_0.0.0.9002.zip(r-4.6-any)SpectraToQueries_0.0.0.9002.zip(r-4.5-any)
SpectraToQueries_0.0.0.9002.tgz(r-4.6-any)SpectraToQueries_0.0.0.9002.tgz(r-4.5-any)
SpectraToQueries_0.0.0.9002.tar.gz(r-4.7-any)SpectraToQueries_0.0.0.9002.tar.gz(r-4.6-any)
SpectraToQueries_0.0.0.9002.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
SpectraToQueries/json (API)
| # Install 'SpectraToQueries' in R: |
| install.packages('SpectraToQueries', repos = c('https://spectra-to-knowledge.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/spectra-to-knowledge/spectra-to-queries/issues
Pkgdown/docs site:https://spectra-to-knowledge.github.io
- mia_spectra_df - Example mass spectrometry spectra from MIADB
- mia_spectra_grouped_df - Grouped mass spectrometry spectra from MIADB
knowledgeextractionspectralinformationqueryingsystemknowledge-extractionmonoterpene-indole-alkaloidsquerying-systemspectral-informationspectral-librarytandem-ms
Last updated from:b2a2560f89 (on main). Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 128 | ||
| source / vignettes | OK | 208 | ||
| linux-release | OK | 123 | ||
| macos-release | OK | 158 | ||
| macos-oldrel | OK | 212 | ||
| windows-devel | OK | 105 | ||
| windows-release | OK | 109 | ||
| windows-oldrel | OK | 124 | ||
| wasm-release | OK | 101 |
Exports:spectra_to_queries
Dependencies:BHBiocGenericsBiocParallelcliclueclustercodetoolscpp11data.tableformatRfsfutile.loggerfutile.optionsgenericsglueIRangeslambda.rlifecyclemagrittrMASSMetaboCoreUtilsMsBackendMgfMsCoreUtilspillarProtGenericsRcpprlangS4VectorssnowSpectratidyselecttidytableutf8vctrswithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Combine ions into minimal AND/OR expression with sorting | combine_ions_minimal |
| Check if spectrum contains all target m/z values | contains_all_mz |
| Check if spectrum contains all target m/z values (internal variant with pre-computed tolerances) | contains_all_mz_tol |
| Create directory | create_dir |
| Create matrix | create_matrix |
| Filter matrix | filter_matrix |
| Fix binned mzs | fix_binned_mzs |
| Generate combinations | generate_combinations |
| Generate combinations with progress | generate_combinations_progress |
| Harmonize mzs | harmonize_mzs |
| Example mass spectrometry spectra from MIADB (as portable data.frame) | mia_spectra_df |
| Grouped mass spectrometry spectra from MIADB (as portable data.frame) | mia_spectra_grouped_df |
| Normalize peaks | normalize_peaks |
| Perform list of queries | perform_list_of_queries |
| Perform list of queries | perform_list_of_queries_progress |
| Perform query | perform_query |
| Prepare spectra data for querying | prepare_query_data |
| Spectra to queries | spectra_to_queries |
