Package: SpectraToQueries
Title: Spectra to queries
Version: 0.0.0.9002
Authors@R: c(
    person(given = "Adriano",
           family = "Rutz",
           email = "adafede@gmail.com",
           role = c("aut", "cre"),
           comment = c(ORCID = "0000-0003-0443-9902")),
    person(given = "Sarah",
           family = "Szwarc",
           email = "sarah.szwarc@universite-paris-saclay.fr",
           role = "ctb",
           comment = c(ORCID = "0000-0001-6369-5522"))
  )
Maintainer: Adriano Rutz <adafede@gmail.com>
Description: SpectraToQueries provides the infrastructure to translate
        spectra to queries.
License: AGPL (>= 3)
URL: https://github.com/spectra-to-knowledge/spectra-to-queries,
        https://spectra-to-knowledge.github.io/SpectraToQueries
BugReports: https://github.com/spectra-to-knowledge/spectra-to-queries/issues
Depends: R (>= 4.5.0)
Imports: BiocParallel (>= 1.44.0), MsBackendMgf (>= 1.18.0), progress
        (>= 1.2.3), purrr (>= 1.2.2), Spectra (>= 1.20.1), tidytable
        (>= 0.11.2), tibble (>= 3.3.0)
Suggests: altdoc (>= 0.7.2), BiocManager (>= 1.30.27), BiocVersion (>=
        3.22.0), grateful (>= 0.3.0), R.utils (>= 2.13.0), spelling (>=
        2.3.2), testthat (>= 3.3.2)
ByteCompile: TRUE
Collate: 'SpectraToQueries-package.R' 'combine_ions_minimal.R'
        'create_dir.R' 'create_matrix.R' 'filter_matrix.R'
        'fix_binned_mzs.R' 'generate_combinations.R' 'globals.R'
        'harmonize_mzs.R' 'normalize_peaks.R'
        'perform_list_of_queries.R' 'spectra_to_queries.R'
Config/roxygen2/markdown: TRUE
Config/roxygen2/version: 8.0.0
Config/testthat/edition: 3
Encoding: UTF-8
Language: en-US
biocViews: knowledgeExtraction, spectralInformation, queryingSystem
X-schema.org-keywords: knowledgeExtraction, spectralInformation,
        queryingSystem
Config/pak/sysreqs: cmake make libuv1-dev
Repository: https://spectra-to-knowledge.r-universe.dev
Date/Publication: 2026-06-30 06:53:23 UTC
RemoteUrl: https://github.com/spectra-to-knowledge/SpectraToQueries
RemoteRef: main
RemoteSha: f420411543097729a969f154dea424b2cb5e0e64
NeedsCompilation: no
Packaged: 2026-06-30 07:07:38 UTC; root
Author: Adriano Rutz [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-0443-9902>),
  Sarah Szwarc [ctb] (ORCID: <https://orcid.org/0000-0001-6369-5522>)